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  5. Solyc10g079880.2.1

Solyc10g079880.2.1 (TIF3E1, INT6,...)


Aliases : TIF3E1, INT6, ATEIF3E-1, INT-6, ATINT6, EIF3E, Solyc10g079880

Description : component eIF3e of eIF3 mRNA-to-PIC binding complex


Gene families : OG0003899 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003899_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g079880.2.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00062980 TIF3E1, INT6,... Protein biosynthesis.translation... 0.06 OrthoFinder output from all 47 species
AT3G57290 TIF3E1, INT6,... eukaryotic translation initiation factor 3E 0.05 OrthoFinder output from all 47 species
Aop_g03167 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Ceric.37G014400.1 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.43 TIF3E1, INT6,... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Cre12.g498100 TIF3E1, INT6,... Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Dac_g22935 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.05 OrthoFinder output from all 47 species
Dcu_g01164 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
GSVIVT01005045001 TIF3E1, INT6,... Protein biosynthesis.translation... 0.07 OrthoFinder output from all 47 species
LOC_Os07g07250.1 TIF3E1, INT6,... component eIF3e of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g12110.1 TIF3E1, INT6,... component eIF3e of eIF3 mRNA-to-PIC binding complex 0.06 OrthoFinder output from all 47 species
MA_7274g0020 TIF3E1, INT6,... component eIF3e of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Mp3g01990.1 TIF3E1, INT6,... component eIF3e of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
Nbi_g12534 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Pir_g09568 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Sam_g18402 No alias component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Smo269977 TIF3E1, INT6,... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Spa_g06033 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Tin_g22892 TIF3E1, INT6,... component *(eIF3e) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e009393_P005 TIF3E1, INT6,... component eIF3e of eIF3 mRNA-to-PIC binding complex 0.12 OrthoFinder output from all 47 species
Zm00001e033116_P002 TIF3E1, INT6,... component eIF3e of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000717 PCI_dom 286 400
IPR019010 eIF3e_N 6 138
No external refs found!