Solyc09g009370.4.1 (Solyc09g009370)


Aliases : Solyc09g009370

Description : no hits & (original description: none)


Gene families : OG0000978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009370.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00035310 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00089p00172750 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.23 OrthoFinder output from all 47 species
Adi_g011982 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g058400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17458 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aev_g19181 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g05070 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g21604 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Als_g22914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32428 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene42699.t1 Aspi01Gene42699 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42701.t2 Aspi01Gene42701 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55586.t1 Aspi01Gene55586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55587.t1 Aspi01Gene55587 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55589.t1 Aspi01Gene55589 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene55590.t1 Aspi01Gene55590 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0009.g011871 No alias not classified & original description: CDS=1-5496 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056668 No alias not classified & original description: CDS=100-1869 0.04 OrthoFinder output from all 47 species
Ceric.09G071300.1 Ceric.09G071300 not classified & original description: pacid=50588528... 0.12 OrthoFinder output from all 47 species
Ceric.09G071400.1 Ceric.09G071400 not classified & original description: pacid=50587640... 0.07 OrthoFinder output from all 47 species
Ceric.21G079300.1 Ceric.21G079300 not classified & original description: pacid=50602615... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001343.3 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre12.g483500 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g04161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26863 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ehy_g19066 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01013268001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01013270001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01017643001 No alias No description available 0.08 OrthoFinder output from all 47 species
Gb_15429 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Gb_35998 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g27110.1 LOC_Os02g27110 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Len_g08664 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g03526 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g25510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10343795g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10426328g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_10428265g0010 No alias no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
MA_10432463g0010 No alias no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
MA_119498g0010 No alias no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
MA_295252g0010 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
MA_36612g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_74056g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_901094g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp7g07570.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g07580.2 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g24541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25798 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g16274 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g02430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005700 No alias not classified & original description: CDS=17-12964 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018244 No alias not classified & original description: CDS=306-11297 0.04 OrthoFinder output from all 47 species
Sam_g17487 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g09459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17786 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009291 Vps62 783 921
IPR009291 Vps62 572 691
IPR009543 VPS13_VAB 2004 2176
IPR009543 VPS13_VAB 1894 2102
No external refs found!