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  5. Solyc07g006180.3.1

Solyc07g006180.3.1 (AtTPR1, TPR1, Solyc07g006180)


Aliases : AtTPR1, TPR1, Solyc07g006180

Description : no hits & (original description: none)


Gene families : OG0004518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g006180.3.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene25065.t1 Aspi01Gene25065 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene25067.t1 Aspi01Gene25067 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g23988 AtTPR1, TPR1 regulatory protein *(TRP1) of ethylene receptor activity... 0.02 OrthoFinder output from all 47 species
Ceric.05G091000.1 AtTPR1, TPR1,... regulatory protein *(TRP1) of ethylene receptor activity... 0.01 OrthoFinder output from all 47 species
GSVIVT01023716001 AtTPR1, TPR1 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum 0.07 OrthoFinder output from all 47 species
Spa_g13161 AtTPR1, TPR1 regulatory protein *(TRP1) of ethylene receptor activity... 0.03 OrthoFinder output from all 47 species
Tin_g12092 AtTPR1, TPR1 regulatory protein *(TRP1) of ethylene receptor activity... 0.03 OrthoFinder output from all 47 species
Zm00001e005968_P001 AtTPR1, TPR1,... no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0010011 auxin binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042562 hormone binding IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013105 TPR_2 165 197
IPR001440 TPR_1 132 163
No external refs found!