Solyc06g065520.3.1 (Solyc06g065520)

Aliases : Solyc06g065520

Description : CCT7 subunit eta of CCT chaperonin folding complex

Gene families : OG0006075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006075_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g065520.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00107630	evm_27.TU.AmTr_v1...	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.06	OrthoFinder output from all 47 species
AT3G11830	No alias	TCP-1/cpn60 chaperonin family protein	0.04	OrthoFinder output from all 47 species
Adi_g113191	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Ala_g16611	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Als_g06827	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0054.g033787	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Ceric.05G016500.1	Ceric.05G016500	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001371.8	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.04	OrthoFinder output from all 47 species
Cre01.g026550	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.07	OrthoFinder output from all 47 species
Dac_g09536	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g14177	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.08	OrthoFinder output from all 47 species
Dde_g02238	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
LOC_Os06g47320.1	LOC_Os06g47320	CCT7 subunit eta of CCT chaperonin folding complex	0.02	OrthoFinder output from all 47 species
Len_g04756	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.04	OrthoFinder output from all 47 species
Lfl_g17138	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
MA_20110g0010	No alias	CCT7 subunit eta of CCT chaperonin folding complex	0.05	OrthoFinder output from all 47 species
Mp7g09680.1	No alias	CCT7 subunit eta of CCT chaperonin folding complex	0.06	OrthoFinder output from all 47 species
Msp_g08578	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Nbi_g00986	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Pp3c15_8230V3.1	Pp3c15_8230	TCP-1/cpn60 chaperonin family protein	0.02	OrthoFinder output from all 47 species
Ppi_g06900	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.04	OrthoFinder output from all 47 species
Sam_g18786	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Sam_g27520	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.04	OrthoFinder output from all 47 species
Smo168086	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.06	OrthoFinder output from all 47 species
Spa_g06049	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.06	OrthoFinder output from all 47 species
Tin_g01076	No alias	subunit eta *(CCT7) of CCT chaperonin folding complex &...	0.06	OrthoFinder output from all 47 species
Zm00001e025196_P001	Zm00001e025196	CCT7 subunit eta of CCT chaperonin folding complex	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0030488	tRNA methylation	IEP	HCCA
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
CC	GO:0043527	tRNA methyltransferase complex	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	35	528

External Links

No external refs found!

Solyc06g065520.3.1 (Solyc06g065520)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation