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  5. Solyc04g016380.3.1

Solyc04g016380.3.1 (Solyc04g016380)


Aliases : Solyc04g016380

Description : BRX1 assembly factor involved in ITS1 rRNA removal


Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g016380.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00215770 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AT1G52930 No alias Ribosomal RNA processing Brix domain protein 0.14 OrthoFinder output from all 47 species
AT3G15460 No alias Ribosomal RNA processing Brix domain protein 0.15 OrthoFinder output from all 47 species
Adi_g045878 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
Aop_g02466 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Cba_g03850 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Ceric.28G058500.1 Ceric.28G058500 assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.16 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre02.g095400 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dac_g07263 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
Dcu_g13208 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01028448001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Gb_30311 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.12 OrthoFinder output from all 47 species
LOC_Os02g37870.1 LOC_Os02g37870 BRX1 assembly factor involved in ITS1 rRNA removal 0.05 OrthoFinder output from all 47 species
Len_g16692 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
MA_14692g0010 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.06 OrthoFinder output from all 47 species
Mp4g04670.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.13 OrthoFinder output from all 47 species
Ore_g29098 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Pp3c16_10600V3.1 Pp3c16_10600 Ribosomal RNA processing Brix domain protein 0.06 OrthoFinder output from all 47 species
Ppi_g52211 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Sam_g14955 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Sam_g52557 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
Smo66840 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Tin_g03875 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Zm00001e022842_P003 Zm00001e022842 BRX1 assembly factor involved in ITS1 rRNA removal 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 57 247
No external refs found!