1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g019940.4.1

Solyc03g019940.4.1 (ATNS1, NS1, OVA8,...)


Aliases : ATNS1, NS1, OVA8, Solyc03g019940

Description : asparagine-tRNA ligase


Gene families : OG0001747 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g019940.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT4G17300 ATNS1, NS1, OVA8 Class II aminoacyl-tRNA and biotin synthetases... 0.05 OrthoFinder output from all 47 species
Adi_g023016 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Aev_g02414 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Ala_g05395 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Aop_g19184 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0090.g042763 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Cba_g74983 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.33G014700.1 ATNS1, NS1,... EC_6.1 ligase forming carbon-oxygen bond & original... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020675.102 ATNS1, NS1, OVA8 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Cre03.g193800 SYNC1 ARATH,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Dac_g02840 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Dcu_g51580 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.07 OrthoFinder output from all 47 species
Ehy_g19094 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01004706001 ATNS1, NS1, OVA8 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.1 OrthoFinder output from all 47 species
Gb_08700 ATNS1, NS1, OVA8 asparagine-tRNA ligase 0.07 OrthoFinder output from all 47 species
LOC_Os07g30200.1 ATNS1, NS1,... asparagine-tRNA ligase 0.08 OrthoFinder output from all 47 species
Lfl_g14374 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Mp6g15140.1 ATNS1, NS1, OVA8 asparagine-tRNA ligase 0.06 OrthoFinder output from all 47 species
Msp_g26463 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g30040 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g30928 SYNC1 ARATH,... EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Ore_g34153 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Pir_g65377 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Pnu_g11615 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Pp3c1_35170V3.1 ATNS1, NS1,... Class II aminoacyl-tRNA and biotin synthetases... 0.01 OrthoFinder output from all 47 species
Sam_g39305 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Spa_g26155 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Tin_g08542 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Zm00001e010372_P004 ATNS1, NS1,... asparagine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Zm00001e034992_P001 ATNS1, NS1,... asparagine-tRNA ligase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 117 195
IPR004364 Aa-tRNA-synt_II 212 565
No external refs found!