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  5. Solyc02g093620.2.1

Solyc02g093620.2.1 (Solyc02g093620)


Aliases : Solyc02g093620

Description : psbJ/psbN-translation activator (LPE1)


Gene families : OG0007915 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007915_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc02g093620.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00149530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46610... 0.02 OrthoFinder output from all 47 species
AT3G46610 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g057096 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.04 OrthoFinder output from all 47 species
Ala_g14659 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.04 OrthoFinder output from all 47 species
Als_g17281 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.04 OrthoFinder output from all 47 species
Aob_g06057 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.23G070300.1 Ceric.23G070300 psbJ/psbN-translation activator *(LPE1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01003980001 No alias Pentatricopeptide repeat-containing protein At3g46610... 0.08 OrthoFinder output from all 47 species
Len_g46359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp6g18510.1 No alias psbJ/psbN-translation activator (LPE1) 0.04 OrthoFinder output from all 47 species
Msp_g31106 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g01191 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 414 463
IPR002885 Pentatricopeptide_repeat 70 114
IPR002885 Pentatricopeptide_repeat 39 68
IPR002885 Pentatricopeptide_repeat 383 411
IPR002885 Pentatricopeptide_repeat 297 356
No external refs found!