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  5. Solyc02g083140.3.1

Solyc02g083140.3.1 (RNEE/G, Solyc02g083140)


Aliases : RNEE/G, Solyc02g083140

Description : endoribonuclease (RNase E)


Gene families : OG0005953 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005953_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g083140.3.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00182640 RNEE/G,... RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
AT2G04270 RNEE/G RNAse E/G-like 0.05 OrthoFinder output from all 47 species
Adi_g013921 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0338.g065594 RNEE/G endoribonuclease *(RNase E) & original description: CDS=133-4767 0.04 OrthoFinder output from all 47 species
Cba_g15885 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G007300.1 RNEE/G, Ceric.10G007300 endoribonuclease *(RNase E) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g12473 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g48453 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30754 RNEE/G endoribonuclease *(RNase E) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01030124001 RNEE/G RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Gb_26019 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g23430.1 RNEE/G, LOC_Os08g23430 endoribonuclease (RNase E) 0.1 OrthoFinder output from all 47 species
MA_10909g0010 RNEE/G endoribonuclease (RNase E) 0.05 OrthoFinder output from all 47 species
Mp7g15630.1 RNEE/G endoribonuclease (RNase E) 0.12 OrthoFinder output from all 47 species
Nbi_g38545 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01412 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g23003 No alias endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26698 No alias endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19266 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003867_P004 RNEE/G, Zm00001e003867 endoribonuclease (RNase E) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019307 RNA-bd_AU-1/RNase_E/G 540 819
No external refs found!