Solyc02g082730.3.1 (AthREP, REP, Solyc02g082730)

Aliases : AthREP, REP, Solyc02g082730

Description : accessory subunit of RAB-GTPase geranylgeranyltransferase (RGT) complex

Gene families : OG0004631 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004631_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g082730.3.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
Cre10.g425550	AthREP, REP	No description available	0.01	OrthoFinder output from all 47 species
Lfl_g10410	AthREP, REP	accessory component of RAB-GTPase...	0.06	OrthoFinder output from all 47 species
Msp_g26546	AthREP, REP	accessory component of RAB-GTPase...	0.03	OrthoFinder output from all 47 species
Sam_g49195	No alias	accessory component of RAB-GTPase...	0.03	OrthoFinder output from all 47 species
Tin_g13546	AthREP, REP	accessory component of RAB-GTPase...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005092	GDP-dissociation inhibitor activity	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008373	sialyltransferase activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018203	GDP_dissociation_inhibitor	14	65
IPR018203	GDP_dissociation_inhibitor	75	455

External Links

No external refs found!

Solyc02g082730.3.1 (AthREP, REP, Solyc02g082730)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation