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  5. Solyc02g061820.4.1

Solyc02g061820.4.1 (EMB16, EMB2036, AKRP,...)


Aliases : EMB16, EMB2036, AKRP, Solyc02g061820

Description : Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana (sp|q05753|akrp_arath : 388.0)


Gene families : OG0002523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g061820.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138080 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT5G40160 EMB139, EMB506 Ankyrin repeat family protein 0.09 OrthoFinder output from all 47 species
AT5G66055 EMB16, EMB2036, AKRP ankyrin repeat protein 0.04 OrthoFinder output from all 47 species
Adi_g045216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10996 EMB139, EMB506 regulatory protein *(Emb506) of embryogenesis & original... 0.03 OrthoFinder output from all 47 species
Als_g07552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06535.t1 Aspi01Gene06535 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0212.g058202 No alias not classified & original description: CDS=359-1396 0.07 OrthoFinder output from all 47 species
Azfi_s0371.g067116 EMB16, EMB2036, AKRP not classified & original description: CDS=69-1934 0.04 OrthoFinder output from all 47 species
Ceric.02G110600.1 Ceric.02G110600 not classified & original description: pacid=50584977... 0.06 OrthoFinder output from all 47 species
Dac_g33805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24387 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01005198001 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.1 OrthoFinder output from all 47 species
Gb_02757 EMB139, EMB506 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_04520 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os06g13000.1 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.08 OrthoFinder output from all 47 species
Mp4g14600.1 No alias Ankyrin repeat domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Nbi_g00869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18520 EMB16, EMB2036, AKRP not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g04583 EMB139, EMB506 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16350 EMB139, EMB506 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41339 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010764 No alias not classified & original description: CDS=422-1504 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012861 No alias not classified & original description: CDS=270-1178 0.03 OrthoFinder output from all 47 species
Sam_g51353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47848 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e025292_P002 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 333 415
No external refs found!