Solyc01g103720.4.1 (Solyc01g103720)

Aliases : Solyc01g103720

Description : component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex

Gene families : OG0005027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g103720.4.1
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00239810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT2G40360	No alias	Transducin/WD40 repeat-like superfamily protein	0.21	OrthoFinder output from all 47 species
Adi_g024474	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.04	OrthoFinder output from all 47 species
Aop_g12459	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.02	OrthoFinder output from all 47 species
Azfi_s0280.g062281	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.09	OrthoFinder output from all 47 species
Ceric.28G059200.1	Ceric.28G059200	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000382.38	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Cre10.g417950	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Dcu_g10502	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.03	OrthoFinder output from all 47 species
Ehy_g04956	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.02	OrthoFinder output from all 47 species
GSVIVT01004116001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
LOC_Os07g25440.1	LOC_Os07g25440	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.24	OrthoFinder output from all 47 species
MA_10426057g0010	No alias	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.09	OrthoFinder output from all 47 species
Mp2g26050.1	No alias	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.17	OrthoFinder output from all 47 species
Pp3c18_14790V3.1	Pp3c18_14790	Transducin/WD40 repeat-like superfamily protein	0.04	OrthoFinder output from all 47 species
Ppi_g17370	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.03	OrthoFinder output from all 47 species
Sam_g10421	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.06	OrthoFinder output from all 47 species
Smo165451	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Smo269521	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e017600_P002	Zm00001e017600	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.22	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	229	264
IPR001680	WD40_repeat	529	568
IPR001680	WD40_repeat	477	513
IPR012953	BOP1_N_dom	7	226

External Links

No external refs found!

Solyc01g103720.4.1 (Solyc01g103720)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation