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  5. Solyc01g098170.3.1

Solyc01g098170.3.1 (HST, HST1, Solyc01g098170)


Aliases : HST, HST1, Solyc01g098170

Description : miRNA nuclear export factor (HASTY). XPO5 nucleocytoplasmic transport karyopherin


Gene families : OG0003900 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003900_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g098170.3.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00148220 HST, HST1,... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
AT3G05040 HST, HST1 ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g105485 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.02 OrthoFinder output from all 47 species
Aev_g03349 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene30818.t2 HST, HST1,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g12534 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.02 OrthoFinder output from all 47 species
Ceric.1Z160000.1 HST, HST1, Ceric.1Z160000 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.05 OrthoFinder output from all 47 species
Ceric.24G056400.1 HST, HST1,... not classified & original description: pacid=50628658... 0.05 OrthoFinder output from all 47 species
Cre10.g420400 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g04984 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.03 OrthoFinder output from all 47 species
Ehy_g20262 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01021908001 HST, HST1 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Gb_10620 HST, HST1 miRNA nuclear export factor (HASTY). XPO5... 0.06 OrthoFinder output from all 47 species
LOC_Os01g26160.1 HST, HST1, LOC_Os01g26160 miRNA nuclear export factor (HASTY). XPO5... 0.03 OrthoFinder output from all 47 species
Len_g22948 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.05 OrthoFinder output from all 47 species
Lfl_g18422 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.03 OrthoFinder output from all 47 species
MA_39570g0010 HST, HST1 Protein HASTY 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g06561 HST, HST1 nucleocytoplasmic transport karyopherin *(XPO5) &... 0.02 OrthoFinder output from all 47 species
Smo442126 HST, HST1 Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Zm00001e026304_P001 HST, HST1, Zm00001e026304 miRNA nuclear export factor (HASTY). XPO5... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR013598 Exportin-1/Importin-b-like 106 264
No external refs found!