Solyc01g090200.4.1 (EDD, EDD1, Solyc01g090200)

Aliases : EDD, EDD1, Solyc01g090200

Description : glycine-tRNA ligase

Gene families : OG0005277 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005277_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g090200.4.1

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001466.1	EDD, EDD1	Glycine--tRNA ligase, chloroplastic/mitochondrial 2...	0.01	OrthoFinder output from all 47 species
Cre10.g433000	EDD, EDD1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
GSVIVT01018288001	EDD, EDD1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
LOC_Os06g01400.1	EDD, EDD1, LOC_Os06g01400	glycine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Lfl_g11421	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g08928	EDD, EDD1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g28161	EDD, EDD1	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g25103	No alias	glycine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004820	glycine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006426	glycyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015944	Gly-tRNA-synth_bsu	380	923
IPR002310	Gly-tRNA_ligase_asu	67	344

External Links

No external refs found!

Solyc01g090200.4.1 (EDD, EDD1, Solyc01g090200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation