Solyc01g080840.3.1 (SECA1, AtcpSecA,...)

Aliases : SECA1, AtcpSecA, AGY1, Solyc01g080840

Description : component SecA1 of thylakoid membrane Sec1 translocation system

Gene families : OG0001541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001541_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g080840.3.1
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00116920	SECA1, AtcpSecA,...	Protein translocation.chloroplast.thylakoid membrane...	0.08	OrthoFinder output from all 47 species
AT4G01800	SECA1, AtcpSecA, AGY1	Albino or Glassy Yellow 1	0.05	OrthoFinder output from all 47 species
Adi_g007063	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Aev_g01548	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Ala_g03630	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.03	OrthoFinder output from all 47 species
Ala_g26842	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Aob_g02321	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Aop_g13757	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Aop_g60479	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Aspi01Gene24355.t1	SECA1, AtcpSecA,...	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Aspi01Gene56831.t1	SECA2, Aspi01Gene56831	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0155.g053632	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Cba_g17139	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Ceric.02G067600.1	SECA1, AtcpSecA,...	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000219.51	SECA1, AtcpSecA, AGY1	Protein translocase subunit SecA, chloroplastic...	0.02	OrthoFinder output from all 47 species
Cre12.g517900	SECA1, AtcpSecA, AGY1	Protein translocation.chloroplast.thylakoid membrane...	0.04	OrthoFinder output from all 47 species
Dac_g06495	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Dac_g06496	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.07	OrthoFinder output from all 47 species
Dcu_g05773	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.06	OrthoFinder output from all 47 species
Dde_g09974	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.09	OrthoFinder output from all 47 species
Dde_g13633	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.02	OrthoFinder output from all 47 species
Ehy_g07099	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
GSVIVT01028249001	SECA1, AtcpSecA, AGY1	Protein translocation.chloroplast.thylakoid membrane...	0.18	OrthoFinder output from all 47 species
Gb_00858	SECA1, AtcpSecA, AGY1	Protein translocase subunit SecA, chloroplastic...	0.05	OrthoFinder output from all 47 species
Gb_34931	SECA1, AtcpSecA, AGY1	component SecA1 of thylakoid membrane Sec1 translocation system	0.08	OrthoFinder output from all 47 species
LOC_Os01g21820.1	SECA1, AtcpSecA,...	component SecA2 of inner envelope Sec2 post-import...	0.15	OrthoFinder output from all 47 species
Len_g36322	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.12	OrthoFinder output from all 47 species
Lfl_g02357	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
MA_304459g0010	SECA1, AtcpSecA, AGY1	Protein translocase subunit SecA, chloroplastic...	0.05	OrthoFinder output from all 47 species
Mp5g09750.1	SECA1, AtcpSecA, AGY1	component SecA1 of thylakoid membrane Sec1 translocation system	0.08	OrthoFinder output from all 47 species
Msp_g23935	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Msp_g23936	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.02	OrthoFinder output from all 47 species
Nbi_g15165	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Nbi_g30518	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.07	OrthoFinder output from all 47 species
Ore_g18515	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.09	OrthoFinder output from all 47 species
Pir_g06026	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.05	OrthoFinder output from all 47 species
Pnu_g31499	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Ppi_g14444	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016761	SECA1, AtcpSecA, AGY1	channel-forming component *(Tim23) of inner...	0.06	OrthoFinder output from all 47 species
Sam_g15982	No alias	component *(SecA1) of thylakoid membrane Sec1...	0.03	OrthoFinder output from all 47 species
Smo156007	SECA1, AtcpSecA, AGY1	Protein translocation.chloroplast.thylakoid membrane...	0.06	OrthoFinder output from all 47 species
Spa_g10168	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.08	OrthoFinder output from all 47 species
Spa_g17299	SECA1, AtcpSecA, AGY1	component *(SecA1) of thylakoid membrane Sec1...	0.04	OrthoFinder output from all 47 species
Zm00001e017535_P001	SECA1, AtcpSecA,...	component SecA1 of thylakoid membrane Sec1 translocation system	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0017038	protein import	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011130	SecA_preprotein_X-link_dom	304	410
IPR011115	SecA_DEAD	87	454
IPR011116	SecA_Wing/Scaffold	760	974

External Links

No external refs found!

Solyc01g080840.3.1 (SECA1, AtcpSecA,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation