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  5. LOC_Os12g40540.1

LOC_Os12g40540.1 (LOC_Os12g40540)


Aliases : LOC_Os12g40540

Description : no hits & (original description: none)


Gene families : OG0006644 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g40540.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00263670 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT3G04650 No alias FAD/NAD(P)-binding oxidoreductase family protein 0.04 OrthoFinder output from all 47 species
Aev_g02399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59468.t1 Aspi01Gene59468 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.24G000600.1 Ceric.24G000600 not classified & original description: pacid=50629566... 0.09 OrthoFinder output from all 47 species
Dac_g15341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04006 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g19923 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_11480 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp8g15460.1 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Msp_g15264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08446 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011288 No alias not classified & original description: CDS=168-1793 0.05 OrthoFinder output from all 47 species
Sam_g04642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06269 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo73844 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc01g097160.3.1 Solyc01g097160 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Spa_g25783 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003142_P002 Zm00001e003142 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!