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  5. LOC_Os10g27230.3

LOC_Os10g27230.3 (LOC_Os10g27230)


Aliases : LOC_Os10g27230

Description : deadenylase component CCR4 of CCR4-NOT complex


Gene families : OG0002208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g27230.3
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT3G58580 No alias DNAse I-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g040892 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene57021.t1 Aspi01Gene57021 deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Azfi_s0357.g066801 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.03G018800.1 Ceric.03G018800 deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.1Z049500.1 Ceric.1Z049500 deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Cre11.g475900 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g03066 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Dde_g00902 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
GSVIVT01033442001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Gb_27365 No alias deadenylase component CCR4 of CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Lfl_g06181 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
MA_10919g0010 No alias deadenylase component CCR4 of CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Mp1g17770.1 No alias deadenylase component CCR4 of CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Ore_g12135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16844 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Sam_g39886 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Sam_g39887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10145 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
CC GO:0035658 Mon1-Ccz1 complex IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
CC GO:0070531 BRCA1-A complex IEP HCCA
CC GO:0070552 BRISC complex IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 257 590
No external refs found!