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  5. LOC_Os07g46440.1

LOC_Os07g46440.1 (LOC_Os07g46440)


Aliases : LOC_Os07g46440

Description : component mtRPS9 of small ribosomal subunit proteome


Gene families : OG0002624 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g46440.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218530 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
AT3G49080 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.14 OrthoFinder output from all 47 species
Adi_g022559 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Als_g06246 No alias component *(uS9m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g08459 No alias component *(uS9m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g10959 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000558 No alias component *(uS9m) of small mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.09G015900.1 Ceric.09G015900 component *(uS9m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.92 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Cre02.g106750 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01036122001 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Gb_37974 No alias component mtRPS9 of small ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
Len_g11641 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
MA_10434552g0010 No alias component mtRPS9 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Pnu_g00678 No alias component *(uS9m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g24751 No alias component *(uS9m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc10g080160.2.1 Solyc10g080160 component mtRPS9 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Tin_g01995 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Zm00001e035755_P001 Zm00001e035755 component mtRPS9 of small ribosomal subunit proteome 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 295 415
No external refs found!