LOC_Os06g43690.1 (LOC_Os06g43690)

Aliases : LOC_Os06g43690

Description : SSU processome assembly factor (UTP21)

Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g43690.1
Cluster	HCCA: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
AT4G04940	No alias	transducin family protein / WD-40 repeat family protein	0.14	OrthoFinder output from all 47 species
Adi_g103599	No alias	SSU processome assembly factor *(UTP21) & original...	0.04	OrthoFinder output from all 47 species
Ala_g07767	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0074.g037313	No alias	SSU processome assembly factor *(UTP21) & original...	0.05	OrthoFinder output from all 47 species
Ceric.19G039200.1	Ceric.19G039200	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021348.51	No alias	No description available	0.06	OrthoFinder output from all 47 species
Cre10.g466250	No alias	No description available	0.16	OrthoFinder output from all 47 species
Dcu_g02020	No alias	SSU processome assembly factor *(UTP21) & original...	0.07	OrthoFinder output from all 47 species
Ehy_g18111	No alias	SSU processome assembly factor *(UTP21) & original...	0.06	OrthoFinder output from all 47 species
GSVIVT01034133001	No alias	No description available	0.08	OrthoFinder output from all 47 species
Gb_24979	No alias	SSU processome assembly factor (UTP21)	0.11	OrthoFinder output from all 47 species
Len_g28360	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
MA_42826g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp3g13780.1	No alias	SSU processome assembly factor (UTP21)	0.15	OrthoFinder output from all 47 species
Ore_g28636	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Sam_g13536	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Smo78691	No alias	No description available	0.06	OrthoFinder output from all 47 species
Solyc01g087670.3.1	Solyc01g087670	SSU processome assembly factor (UTP21)	0.22	OrthoFinder output from all 47 species
Tin_g11820	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e037473_P002	Zm00001e037473	SSU processome assembly factor (UTP21)	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007319	SSU_processome_Utp21	670	899
IPR024977	Apc4_WD40_dom	191	277
IPR001680	WD40_repeat	550	586

External Links

No external refs found!

LOC_Os06g43690.1 (LOC_Os06g43690)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation