LOC_Os05g40060.1 (WRKY54, ATWRKY54,...)

Aliases : WRKY54, ATWRKY54, LOC_Os05g40060

Description : transcription factor (WRKY)

Gene families : OG0000020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g40060.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00160270	WRKY75,...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	OrthoFinder output from all 47 species
AMTR_s00015p00181570	WRKY6, ATWRKY6,...	RNA biosynthesis.transcriptional activation.WRKY...	0.01	OrthoFinder output from all 47 species
AMTR_s00045p00128140	WRKY42,...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	OrthoFinder output from all 47 species
AMTR_s00065p00201830	ATWRKY40,...	RNA biosynthesis.transcriptional activation.WRKY...	0.01	OrthoFinder output from all 47 species
AMTR_s00078p00123870	WRKY72,...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	OrthoFinder output from all 47 species
AT1G66550	WRKY67, ATWRKY67	WRKY DNA-binding protein 67	0.03	OrthoFinder output from all 47 species
AT1G80590	WRKY66, ATWRKY66	WRKY DNA-binding protein 66	0.03	OrthoFinder output from all 47 species
AT2G25000	ATWRKY60, WRKY60	WRKY DNA-binding protein 60	0.01	OrthoFinder output from all 47 species
AT3G56400	ATWRKY70, WRKY70	WRKY DNA-binding protein 70	0.02	OrthoFinder output from all 47 species
AT5G01900	WRKY62, ATWRKY62	WRKY DNA-binding protein 62	0.02	OrthoFinder output from all 47 species
AT5G13080	WRKY75, ATWRKY75	WRKY DNA-binding protein 75	0.01	OrthoFinder output from all 47 species
AT5G22570	WRKY38, ATWRKY38	WRKY DNA-binding protein 38	0.02	OrthoFinder output from all 47 species
AT5G24110	ATWRKY30, WRKY30	WRKY DNA-binding protein 30	0.01	OrthoFinder output from all 47 species
AT5G46350	WRKY8, ATWRKY8	WRKY DNA-binding protein 8	0.03	OrthoFinder output from all 47 species
AT5G64810	ATWRKY51, WRKY51	WRKY DNA-binding protein 51	0.03	OrthoFinder output from all 47 species
Aspi01Gene06722.t1	ATWRKY58,...	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene48248.t2	WRKY6, ATWRKY6,...	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene52711.t1	Aspi01Gene52711	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene64694.t1	WRKY6, ATWRKY6,...	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene64697.t1	WRKY6, ATWRKY6,...	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene65379.t1	Aspi01Gene65379	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene65380.t1	Aspi01Gene65380	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene68493.t1	WRKY28,...	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0007.g011077	ATWRKY71, WRKY71	WRKY-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Azfi_s0050.g031134	AtWRKY20, WRKY20	WRKY-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Azfi_s0925.g092890	ATWRKY24, WRKY24	WRKY-type transcription factor & original description: CDS=1-720	0.03	OrthoFinder output from all 47 species
Dde_g12270	WRKY55, ATWRKY55	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g23435	ATWRKY45, WRKY45	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01020060001	WRKY72, ATWRKY72	RNA biosynthesis.transcriptional activation.WRKY...	0.01	OrthoFinder output from all 47 species
GSVIVT01029688001	WRKY9, ATWRKY9	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
Gb_05024	No alias	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
Gb_23334	WRKY31, ATWRKY31	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
LOC_Os01g14440.1	WRKY6, ATWRKY6,...	transcription factor (WRKY)	0.01	OrthoFinder output from all 47 species
LOC_Os01g46800.1	WRKY53,...	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species
LOC_Os01g60520.1	WRKY55,...	transcription factor (WRKY)	0.01	OrthoFinder output from all 47 species
LOC_Os01g60540.1	WRKY62,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os03g21710.1	ATWRKY70,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os07g02060.1	ATWRKY57,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os07g48260.1	WRKY54,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os09g25060.1	ATWRKY40,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
LOC_Os09g25070.1	ATWRKY40,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os11g45850.1	WRKY26, LOC_Os11g45850	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Len_g11805	ATWRKY30, WRKY30	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
MA_10426942g0010	ATWRKY24, WRKY24	transcription factor (WRKY)	0.01	OrthoFinder output from all 47 species
MA_10432362g0010	ATWRKY50, WRKY50	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
MA_4321850g0010	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
MA_7068293g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp4g00200.1	WRKY6, ATWRKY6	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Pnu_g26988	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g46314	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g095630.3.1	AtWRKY41,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc02g071130.4.1	ATWRKY71,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc02g080890.3.1	WRKY6, ATWRKY6,...	transcription factor (WRKY)	0.01	OrthoFinder output from all 47 species
Solyc03g007380.2.1	AtWRKY41,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc04g051690.4.1	ATWRKY51,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Solyc04g072070.3.1	ATWRKY51,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc05g015850.4.1	WRKY75,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc06g048870.3.1	WRKY55,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc07g056280.3.1	ATWRKY71,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Solyc08g067340.4.1	ATWRKY40,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Solyc08g067360.3.1	ATWRKY40,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc10g009550.3.1	ATWRKY30,...	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
Solyc12g056750.3.1	ATWRKY51,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Tin_g16789	WRKY56, ATWRKY56	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g39195	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005219_P001	WRKY1, ZAP1,...	transcription factor (WRKY)	0.01	OrthoFinder output from all 47 species
Zm00001e005732_P002	ATWRKY57,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Zm00001e020279_P001	WRKY53,...	transcription factor (WRKY)	0.01	OrthoFinder output from all 47 species
Zm00001e028011_P002	ATWRKY71,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e036450_P001	WRKY53,...	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
Zm00001e040369_P001	WRKY6, ATWRKY6,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004568	chitinase activity	IEP	HCCA
BP	GO:0006022	aminoglycan metabolic process	IEP	HCCA
BP	GO:0006026	aminoglycan catabolic process	IEP	HCCA
BP	GO:0006030	chitin metabolic process	IEP	HCCA
BP	GO:0006032	chitin catabolic process	IEP	HCCA
BP	GO:0006040	amino sugar metabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0046348	amino sugar catabolic process	IEP	HCCA
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	HCCA
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	127	186

External Links

No external refs found!

LOC_Os05g40060.1 (WRKY54, ATWRKY54,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation