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  5. LOC_Os05g39390.1

LOC_Os05g39390.1 (LOC_Os05g39390)


Aliases : LOC_Os05g39390

Description : component SAM/Tob55 of outer mitochondrion membrane SAM insertion system


Gene families : OG0002512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002512_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g39390.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00012840 evm_27.TU.AmTr_v1... Protein translocation.mitochondrion.outer mitochondrion... 0.02 OrthoFinder output from all 47 species
Adi_g080784 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.02 OrthoFinder output from all 47 species
Ala_g01991 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.02 OrthoFinder output from all 47 species
Als_g24042 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.02 OrthoFinder output from all 47 species
Ceric.14G006800.1 Ceric.14G006800 component *(SAM/Tob55) of outer mitochondrion membrane... 0.06 OrthoFinder output from all 47 species
Ceric.31G001800.1 Ceric.31G001800 component *(SAM/Tob55) of outer mitochondrion membrane... 0.03 OrthoFinder output from all 47 species
Cre06.g308900 No alias Protein translocation.mitochondrion.outer mitochondrion... 0.03 OrthoFinder output from all 47 species
Dac_g22817 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.03 OrthoFinder output from all 47 species
Len_g14518 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.03 OrthoFinder output from all 47 species
MA_100751g0010 No alias component SAM/Tob55 of outer mitochondrion membrane SAM... 0.06 OrthoFinder output from all 47 species
Mp3g14820.1 No alias component SAM/Tob55 of outer mitochondrion membrane SAM... 0.02 OrthoFinder output from all 47 species
Msp_g12646 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.02 OrthoFinder output from all 47 species
Nbi_g08075 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.02 OrthoFinder output from all 47 species
Pir_g15415 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.03 OrthoFinder output from all 47 species
Sam_g35991 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.06 OrthoFinder output from all 47 species
Smo139554 No alias Protein translocation.mitochondrion.outer mitochondrion... 0.03 OrthoFinder output from all 47 species
Spa_g08913 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.04 OrthoFinder output from all 47 species
Tin_g14357 No alias component *(SAM/Tob55) of outer mitochondrion membrane... 0.03 OrthoFinder output from all 47 species
Zm00001e027280_P001 Zm00001e027280 component SAM/Tob55 of outer mitochondrion membrane SAM... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0019867 outer membrane IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR010827 BamA/TamA_POTRA 68 145
IPR000184 Bac_surfAg_D15 175 517
No external refs found!