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  5. LOC_Os05g05320.1

LOC_Os05g05320.1 (LOC_Os05g05320)


Aliases : LOC_Os05g05320

Description : Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana (sp|q8vyr5|pp351_arath : 514.0)


Gene families : OG0005110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g05320.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00033890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35850,... 0.02 OrthoFinder output from all 47 species
AT4G35850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 OrthoFinder output from all 47 species
Als_g03710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032367001 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.05 OrthoFinder output from all 47 species
Gb_40110 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.07 OrthoFinder output from all 47 species
Gb_40112 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.02 OrthoFinder output from all 47 species
Len_g03290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434276g0010 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.05 OrthoFinder output from all 47 species
MA_5480780g0010 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.05 OrthoFinder output from all 47 species
Mp7g04570.1 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.07 OrthoFinder output from all 47 species
Nbi_g00854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g112020.3.1 Solyc01g112020 Pentatricopeptide repeat-containing protein At4g35850,... 0.11 OrthoFinder output from all 47 species
Spa_g11968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e027516_P001 Zm00001e027516 Pentatricopeptide repeat-containing protein At4g35850,... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 67 179
IPR002885 Pentatricopeptide_repeat 306 324
No external refs found!