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  5. LOC_Os05g01750.1

LOC_Os05g01750.1 (LOC_Os05g01750)


Aliases : LOC_Os05g01750

Description : tRNA pseudouridine synthase (TruB)


Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g01750.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00225390 evm_27.TU.AmTr_v1... RNA processing.RNA... 0.02 OrthoFinder output from all 47 species
AT5G14460 No alias Pseudouridine synthase family protein 0.06 OrthoFinder output from all 47 species
Azfi_s0051.g031272 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Cba_g23041 No alias TruB-type tRNA pseudouridine synthase & original... 0.01 OrthoFinder output from all 47 species
Ceric.07G028400.1 Ceric.07G028400 TruB-type tRNA pseudouridine synthase & original... 0.03 OrthoFinder output from all 47 species
Dcu_g21012 No alias TruB-type tRNA pseudouridine synthase & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01032383001 No alias RNA processing.RNA... 0.03 OrthoFinder output from all 47 species
MA_120184g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g35846 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Sam_g26745 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Solyc02g093460.4.1 Solyc02g093460 tRNA pseudouridine synthase (TruB) 0.08 OrthoFinder output from all 47 species
Zm00001e029672_P001 Zm00001e029672 tRNA pseudouridine synthase (TruB) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 290 440
IPR032819 TruB_C 441 483
No external refs found!