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  5. LOC_Os05g01710.1

LOC_Os05g01710.1 (LOC_Os05g01710)


Aliases : LOC_Os05g01710

Description : small subunit of TFIIa basal transcription factor complex


Gene families : OG0001736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g01710.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g074792 No alias small subunit of TFIIa basal transcription factor... 0.02 OrthoFinder output from all 47 species
Aev_g17343 No alias small subunit of TFIIa basal transcription factor... 0.02 OrthoFinder output from all 47 species
Dac_g02944 No alias small subunit of TFIIa basal transcription factor... 0.03 OrthoFinder output from all 47 species
Tin_g12232 No alias small subunit of TFIIa basal transcription factor... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005672 transcription factor TFIIA complex IEA Interproscan
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR015872 TFIIA_gsu_N 4 49
IPR015871 TFIIA_gsu_C 59 101
No external refs found!