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  5. LOC_Os04g45040.3

LOC_Os04g45040.3 (RH8, ATRH8, LOC_Os04g45040)


Aliases : RH8, ATRH8, LOC_Os04g45040

Description : DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica (sp|q7xmk8|rh6_orysj : 880.0)


Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g45040.3

Target Alias Description ECC score Gene Family Method Actions
Adi_g012833 RH8, ATRH8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02069 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02137 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009123 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001086.7 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Cre04.g223850 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Dac_g00876 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08850 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019787001 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01026866001 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Lfl_g03846 No alias DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g14570.1 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Pir_g00579 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12186 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g048850.4.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Solyc10g017530.3.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Tin_g02032 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03368 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004416_P001 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Zm00001e012585_P001 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 149 313
IPR001650 Helicase_C 350 456
No external refs found!