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  5. LOC_Os04g40850.1

LOC_Os04g40850.1 (LOC_Os04g40850)


Aliases : LOC_Os04g40850

Description : regulatory component RPN7 of 26S proteasome


Gene families : OG0004513 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004513_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g40850.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT4G24820 No alias 26S proteasome, regulatory subunit Rpn7;Proteasome... 0.12 OrthoFinder output from all 47 species
Aop_g00533 No alias regulatory component *(RPN7) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cba_g10280 No alias regulatory component *(RPN7) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ceric.15G063400.1 Ceric.15G063400 regulatory component *(RPN7) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.75 No alias Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Cre13.g581450 No alias Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
Dcu_g08722 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Dde_g04762 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ehy_g03536 No alias regulatory component *(RPN7) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01007538001 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Mp1g10100.1 No alias regulatory component RPN7 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Pir_g01571 No alias regulatory component *(RPN7) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Smo146093 No alias Protein degradation.26S proteasome.regulatory... 0.07 OrthoFinder output from all 47 species
Solyc07g009140.3.1 Solyc07g009140 regulatory component RPN7 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Spa_g50785 No alias regulatory component *(RPN7) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e007775_P001 Zm00001e007775 regulatory component RPN7 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Zm00001e015028_P002 Zm00001e015028 regulatory component RPN7 of 26S proteasome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR000717 PCI_dom 255 355
IPR019585 Rpn7/CSN1 66 239
No external refs found!