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  5. LOC_Os02g39740.1

LOC_Os02g39740.1 (ATAB2, LOC_Os02g39740)


Aliases : ATAB2, LOC_Os02g39740

Description : Protein TAB2 homolog, chloroplastic OS=Oryza sativa subsp. japonica (sp|q6k9c1|atab2_orysj : 602.0)


Gene families : OG0004008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g39740.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00115980 ATAB2,... Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G08010 ATAB2 RNA binding 0.05 OrthoFinder output from all 47 species
Adi_g014503 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g07833 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09787 ATAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22462 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g04128 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g04239 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g31544 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61714.t1 ATAB2, Aspi01Gene61714 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g03154 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G068300.1 ATAB2, Ceric.21G068300 not classified & original description: pacid=50604093... 0.06 OrthoFinder output from all 47 species
Cre17.g702500 ATAB2 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g18139 ATAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14997 ATAB2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g18747 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04344 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16983 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g05805 ATAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01032129001 ATAB2 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
Gb_34984 ATAB2 Protein TAB2 homolog, chloroplastic OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Gb_34986 ATAB2 Protein TAB2 homolog, chloroplastic OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Len_g43889 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01384 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g30744 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10430622g0010 ATAB2 Protein TAB2 homolog, chloroplastic OS=Zea mays... 0.06 OrthoFinder output from all 47 species
Mp1g14850.1 ATAB2 Protein TAB2 homolog, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g02016 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g09962 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g00688 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01898 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02783 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g10236 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03703 ATAB2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g32398 ATAB2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015277 ATAB2 not classified & original description: CDS=173-1390 0.02 OrthoFinder output from all 47 species
Sam_g10050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10068 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g00858 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10787 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e015079_P001 ATAB2, Zm00001e015079 Protein TAB2 homolog, chloroplastic OS=Zea mays... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005779 obsolete integral component of peroxisomal membrane IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009472 Tab2-like 110 384
No external refs found!