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  5. LOC_Os02g04500.2

LOC_Os02g04500.2 (LOC_Os02g04500)


Aliases : LOC_Os02g04500

Description : no hits & (original description: none)


Gene families : OG0006770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006770_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g04500.2

Target Alias Description ECC score Gene Family Method Actions
AT5G10910 No alias mraW methylase family protein 0.11 OrthoFinder output from all 47 species
Cre13.g568150 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01035599001 No alias No description available 0.06 OrthoFinder output from all 47 species
Mp5g15830.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g30320 No alias RsmH-type rRNA methyltransferase *(CMAL) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g14639 No alias RsmH-type rRNA methyltransferase *(CMAL) & original... 0.03 OrthoFinder output from all 47 species
Sam_g18481 No alias RsmH-type rRNA methyltransferase *(CMAL) & original... 0.02 OrthoFinder output from all 47 species
Spa_g26142 No alias RsmH-type rRNA methyltransferase *(CMAL) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e013613_P005 Zm00001e013613 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002903 RsmH 90 435
No external refs found!