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  5. LOC_Os01g74180.1

LOC_Os01g74180.1 (PAT2, LOC_Os01g74180)


Aliases : PAT2, LOC_Os01g74180

Description : large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex


Gene families : OG0006164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g74180.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT3G55480 PAT2 protein affected trafficking 2 0.03 OrthoFinder output from all 47 species
Aev_g10362 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Ala_g22699 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Aop_g26219 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Aspi01Gene60945.t1 PAT2, Aspi01Gene60945 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Azfi_s0366.g066967 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Ceric.28G061600.1 PAT2, Ceric.28G061600 large subunit beta of AP-3 Golgi to vacuole cargo... 0.04 OrthoFinder output from all 47 species
Dcu_g19428 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.08 OrthoFinder output from all 47 species
GSVIVT01016531001 PAT2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 OrthoFinder output from all 47 species
Gb_19472 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.05 OrthoFinder output from all 47 species
MA_10436689g0010 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.05 OrthoFinder output from all 47 species
MA_175737g0010 PAT2 AP3-complex subunit beta-A OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp6g07170.1 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.03 OrthoFinder output from all 47 species
Ore_g20296 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.04 OrthoFinder output from all 47 species
Smo118138 PAT2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Solyc06g043030.4.1 PAT2, Solyc06g043030 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.1 OrthoFinder output from all 47 species
Zm00001e029209_P001 PAT2, Zm00001e029209 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0097354 prenylation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR029390 AP3B_C 798 877
IPR002553 Clathrin/coatomer_adapt-like_N 35 613
No external refs found!