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  5. LOC_Os01g47450.1

LOC_Os01g47450.1 (LOC_Os01g47450)


Aliases : LOC_Os01g47450

Description : carboxy-terminal processing peptidase (CtpA)


Gene families : OG0001069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001069_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g47450.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00050p00221590 evm_27.TU.AmTr_v1... Protein modification.peptide maturation.plastid.CtpA... 0.04 OrthoFinder output from all 47 species
AMTR_s00100p00127450 evm_27.TU.AmTr_v1... Protein modification.peptide maturation.plastid.CtpA... 0.02 OrthoFinder output from all 47 species
AT5G46390 No alias Peptidase S41 family protein 0.03 OrthoFinder output from all 47 species
Ala_g07448 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.02 OrthoFinder output from all 47 species
Als_g17648 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Aob_g05172 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Aop_g14243 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Aop_g29172 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.04 OrthoFinder output from all 47 species
Cba_g70114 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.04 OrthoFinder output from all 47 species
Ceric.35G069200.1 Ceric.35G069200 carboxy-terminal processing peptidase *(CtpA) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000900.16 No alias Carboxyl-terminal-processing peptidase 2, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cre06.g265850 No alias Protein modification.peptide maturation.plastid.CtpA... 0.02 OrthoFinder output from all 47 species
Dac_g16305 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.04 OrthoFinder output from all 47 species
Dde_g11824 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19495 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g30564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001855001 No alias Protein modification.peptide maturation.plastid.CtpA... 0.08 OrthoFinder output from all 47 species
GSVIVT01021388001 No alias Protein modification.peptide maturation.plastid.CtpA... 0.08 OrthoFinder output from all 47 species
Gb_35902 No alias Carboxyl-terminal-processing peptidase 2, chloroplastic... 0.02 OrthoFinder output from all 47 species
Len_g02340 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g10534 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
MA_10425812g0010 No alias Carboxyl-terminal-processing peptidase 2, chloroplastic... 0.01 OrthoFinder output from all 47 species
MA_9566g0010 No alias Carboxyl-terminal-processing peptidase 3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp6g10620.1 No alias carboxy-terminal processing peptidase (CtpA) 0.08 OrthoFinder output from all 47 species
Mp7g16940.1 No alias carboxy-terminal processing peptidase (CtpA) 0.07 OrthoFinder output from all 47 species
Msp_g10757 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.02 OrthoFinder output from all 47 species
Ore_g20885 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Pir_g04557 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g32442 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g47259 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g61234 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.02 OrthoFinder output from all 47 species
Smo143443 No alias Protein modification.peptide maturation.plastid.CtpA... 0.03 OrthoFinder output from all 47 species
Solyc12g097030.2.1 Solyc12g097030 carboxy-terminal processing peptidase (CtpA) 0.06 OrthoFinder output from all 47 species
Spa_g16834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036922_P004 Zm00001e036922 carboxy-terminal processing peptidase (CtpA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008236 serine-type peptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005151 Tail-specific_protease 279 452
IPR041489 PDZ_6 196 243
No external refs found!