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  5. LOC_Os01g36920.2

LOC_Os01g36920.2 (LOC_Os01g36920)


Aliases : LOC_Os01g36920

Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g36920.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.05 OrthoFinder output from all 47 species
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.07 OrthoFinder output from all 47 species
Adi_g085034 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52184 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Dcu_g19847 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43300 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g13215 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51328 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g066060.3.1 Solyc06g066060 RNA helicase (Sub2). helicase component UAP56 of... 0.07 OrthoFinder output from all 47 species
Tin_g31414 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026684_P001 Zm00001e026684 RNA helicase (Sub2). helicase component UAP56 of... 0.05 OrthoFinder output from all 47 species
Zm00001e027715_P001 Zm00001e027715 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 193 300
IPR011545 DEAD/DEAH_box_helicase_dom 2 153
No external refs found!