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  5. MA_42234g0010

MA_42234g0010 (RPN1A, ATRPN1A)


Aliases : RPN1A, ATRPN1A

Description : 26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana (sp|q9siv2|psd2a_arath : 371.0)


Gene families : OG0003700 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003700_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_42234g0010
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242820 RPN1A, ATRPN1A,... Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Adi_g055914 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aev_g10435 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ala_g02514 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cba_g59194 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.33G015600.1 RPN1A, ATRPN1A,... regulatory component *(RPN1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cre16.g676197 RPN1B, ATRPN1B Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Dac_g15343 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Dcu_g06470 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Dde_g02349 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
GSVIVT01020602001 RPN1A, ATRPN1A Protein degradation.26S proteasome.regulatory... 0.08 OrthoFinder output from all 47 species
Gb_05383 RPN1A, ATRPN1A regulatory component RPN1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Len_g01899 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Lfl_g05692 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Mp5g07110.1 RPN1A, ATRPN1A regulatory component RPN1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Sam_g09731 No alias regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Solyc07g053650.4.1 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Tin_g10608 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e013651_P001 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e025223_P001 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR040892 RPN1_N 45 291
No external refs found!