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Aliases : VIP2, AtVIP2
Description : component NOT2 of mRNA deadenylation CCR4-NOT complex
Gene families : OG0002132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002132_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_19243g0010 | |
| Cluster | HCCA: Cluster_241 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G07705 | No alias | NOT2 / NOT3 / NOT5 family | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g015721 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g109476 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g06550 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g15009 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g13368 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene38795.t1 | Aspi01Gene38795 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene51728.t1 | VIP2, AtVIP2,... | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.1Z074000.1 | Ceric.1Z074000 | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g52594.4 | LOC_Os03g52594 | component NOT2 of mRNA deadenylation CCR4-NOT complex | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03249 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g21150.1 | No alias | component NOT2 of mRNA deadenylation CCR4-NOT complex | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g20979 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30590 | VIP2, AtVIP2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g06699 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g075590.4.1 | Solyc06g075590 | component NOT2 of mRNA deadenylation CCR4-NOT complex | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g072940.2.1 | Solyc11g072940 | component NOT2 of mRNA deadenylation CCR4-NOT complex | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g16859 | No alias | component *(NOT2) of mRNA deadenylation CCR4-NOT complex... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e031975_P003 | VIP2, AtVIP2,... | component NOT2 of mRNA deadenylation CCR4-NOT complex | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |