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  5. MA_18349g0010

MA_18349g0010 (PSB28)


Aliases : PSB28

Description : Psb28 protein involved in PS-II assembly


Gene families : OG0005594 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005594_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_18349g0010
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00160690 PSB28,... Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
AT4G28660 PSB28 photosystem II reaction center PSB28 protein 0.08 OrthoFinder output from all 47 species
Aev_g03543 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Ala_g08604 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.09 OrthoFinder output from all 47 species
Als_g06924 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Aop_g06562 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene01403.t1 PSB28, Aspi01Gene01403 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G032000.1 PSB28, Ceric.07G032000 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Cre10.g440450 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Dac_g09174 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g46324 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.07 OrthoFinder output from all 47 species
Ehy_g01982 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.07 OrthoFinder output from all 47 species
Gb_39548 PSB28 Psb28 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
LOC_Os01g71190.1 PSB28, LOC_Os01g71190 Psb28 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Len_g02114 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Mp2g14630.1 PSB28 Psb28 protein involved in PS-II assembly 0.11 OrthoFinder output from all 47 species
Msp_g08495 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Msp_g12017 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.06 OrthoFinder output from all 47 species
Msp_g18510 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g14351 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Ore_g32149 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.08 OrthoFinder output from all 47 species
Pnu_g01103 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g14394 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Sam_g09153 No alias protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Solyc09g064500.3.1 PSB28, Solyc09g064500 Psb28 protein involved in PS-II assembly 0.09 OrthoFinder output from all 47 species
Spa_g21623 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.07 OrthoFinder output from all 47 species
Tin_g00351 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e018703_P001 PSB28, Zm00001e018703 Psb28 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005610 PSII_Psb28_class-1 93 198
No external refs found!