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  5. MA_165810g0010

MA_165810g0010


Description : Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana (sp|q8lds4|nakr1_arath : 95.5)


Gene families : OG0000090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_165810g0010
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT5G66110 HIPP27 Heavy metal transport/detoxification superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g08492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g50558 NAKR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g015902 CCH copper chaperone *(ATX/CCH) & original description: CDS=82-618 0.02 OrthoFinder output from all 47 species
Cba_g24863 ATX1, ATATX1 copper chaperone *(ATX/CCH) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g14183 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g40394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g28851 NAKR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g30764 HIPP22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019700001 No alias Heavy metal-associated isoprenylated plant protein 30... 0.05 OrthoFinder output from all 47 species
Gb_12907 No alias Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_21296 No alias Heavy metal-associated isoprenylated plant protein 30... 0.04 OrthoFinder output from all 47 species
Gb_33825 No alias copper chaperone (CCH) 0.04 OrthoFinder output from all 47 species
LOC_Os02g32814.1 SLAH3, LOC_Os02g32814 copper chaperone (CCH) 0.03 OrthoFinder output from all 47 species
LOC_Os03g06080.1 HIPP27, LOC_Os03g06080 Heavy metal-associated isoprenylated plant protein 27... 0.03 OrthoFinder output from all 47 species
Lfl_g35825 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_525649g0010 No alias Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_84241g0010 No alias Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_94570g0010 No alias Heavy metal-associated isoprenylated plant protein 30... 0.05 OrthoFinder output from all 47 species
Mp2g12480.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g26500.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp5g20370.1 No alias copper chaperone (CCH) 0.06 OrthoFinder output from all 47 species
Mp7g16230.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g06477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g45463 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g45834 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g10827 ATX1, ATATX1 copper chaperone *(ATX/CCH) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g050710.4.1 Solyc06g050710 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0030001 metal ion transport IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006121 HMA_dom 182 232
No external refs found!