MA_10436968g0010

Description : peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2 of coat protein complex

Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10436968g0010
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00013680	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
AT1G79990	No alias	structural molecules	0.04	OrthoFinder output from all 47 species
AT3G15980	No alias	Coatomer, beta' subunit	0.04	OrthoFinder output from all 47 species
Aev_g13025	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Ala_g02602	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Als_g04780	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g23306	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Als_g23307	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Als_g40139	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g06720	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Ceric.30G060200.1	Ceric.30G060200	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.33	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
Cre02.g118500	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
Dcu_g04083	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
Dde_g02366	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01017121001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.05	OrthoFinder output from all 47 species
Gb_26317	No alias	subunit beta2 of coat protein complex	0.04	OrthoFinder output from all 47 species
Len_g12266	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Len_g46090	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Lfl_g05710	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
MA_10436836g0020	No alias	Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica...	0.01	OrthoFinder output from all 47 species
Mp3g04060.1	No alias	subunit beta2 of coat protein complex	0.05	OrthoFinder output from all 47 species
Nbi_g07405	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Ore_g10228	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Pir_g14528	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Solyc03g120270.4.1	Solyc03g120270	subunit beta2 of coat protein complex	0.08	OrthoFinder output from all 47 species
Solyc12g043000.3.1	Solyc12g043000	subunit beta2 of coat protein complex	0.07	OrthoFinder output from all 47 species
Spa_g17544	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Spa_g50190	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e014494_P001	Zm00001e014494	subunit beta2 of coat protein complex	0.06	OrthoFinder output from all 47 species
Zm00001e024969_P001	Zm00001e024969	subunit beta2 of coat protein complex	0.06	OrthoFinder output from all 47 species
Zm00001e030001_P002	Zm00001e030001	subunit beta2 of coat protein complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	533	569
IPR001680	WD40_repeat	662	698
IPR001680	WD40_repeat	574	613
IPR001680	WD40_repeat	619	657
IPR002937	Amino_oxidase	285	405
IPR002937	Amino_oxidase	36	279
IPR006692	Coatomer_WD-assoc_reg	761	1124

External Links

No external refs found!

MA_10436968g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation