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  5. Mp7g04610.1

Mp7g04610.1


Description : DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa subsp. japonica (sp|q6atj8|rh16_orysj : 544.0)


Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g04610.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT4G34910 No alias P-loop containing nucleoside triphosphate hydrolases... 0.12 OrthoFinder output from all 47 species
Adi_g012474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g00983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0551.g076593 No alias not classified & original description: CDS=64-1935 0.02 OrthoFinder output from all 47 species
Cba_g43203 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.24G071500.1 Ceric.24G071500 not classified & original description: pacid=50629253... 0.05 OrthoFinder output from all 47 species
Cre12.g526850 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.13 OrthoFinder output from all 47 species
Dac_g43527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g00762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_38528 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os03g51900.1 LOC_Os03g51900 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.15 OrthoFinder output from all 47 species
Lfl_g07340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_34193g0020 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_71366g0010 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g07475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57111 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g09706 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo440996 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.11 OrthoFinder output from all 47 species
Solyc02g070100.3.1 Solyc02g070100 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Spa_g09337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g40380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012111_P001 Zm00001e012111 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 266 417
IPR011545 DEAD/DEAH_box_helicase_dom 50 228
No external refs found!