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  5. Mp7g00430.1

Mp7g00430.1


Description : DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica (sp|q6h601|rh22_orysj : 423.0)


Gene families : OG0005997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005997_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g00430.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G59990 No alias DEA(D/H)-box RNA helicase family protein 0.08 OrthoFinder output from all 47 species
Adi_g024183 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0041.g026719 No alias not classified & original description: CDS=40-1947 0.02 OrthoFinder output from all 47 species
Ceric.13G012600.1 Ceric.13G012600 not classified & original description: pacid=50635549... 0.07 OrthoFinder output from all 47 species
Cre03.g166650 No alias DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dcu_g15194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020175001 No alias DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
LOC_Os09g21520.2 LOC_Os09g21520 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Pnu_g33974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g006130.4.1 Solyc05g006130 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Spa_g17131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034031_P002 Zm00001e034031 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 146 306
IPR001650 Helicase_C 471 565
No external refs found!