Mp4g12650.1 (CBF5, AtCBF5, NAP57, AtNAP57)

Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : pseudouridine synthase component Nap57/CBF5 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex

Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g12650.1
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00253700	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
AT3G57150	CBF5, AtCBF5,...	homologue of NAP57	0.04	OrthoFinder output from all 47 species
Adi_g018158	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Aop_g04269	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
Azfi_s0132.g049274	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.02	OrthoFinder output from all 47 species
Ceric.36G038600.1	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000553.10	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.09	OrthoFinder output from all 47 species
Cre03.g172950	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.07	OrthoFinder output from all 47 species
Dcu_g11724	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Dde_g50563	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01034188001	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.05	OrthoFinder output from all 47 species
Gb_32372	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.06	OrthoFinder output from all 47 species
Gb_34541	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.05	OrthoFinder output from all 47 species
Lfl_g10584	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.05	OrthoFinder output from all 47 species
MA_27456g0030	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007551	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Sam_g17675	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.02	OrthoFinder output from all 47 species
Smo81986	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
Solyc02g081810.4.1	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.07	OrthoFinder output from all 47 species
Spa_g05917	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.02	OrthoFinder output from all 47 species
Zm00001e017259_P001	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.02	OrthoFinder output from all 47 species
Zm00001e025570_P001	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002478	PUA	301	373
IPR012960	Dyskerin-like	53	110
IPR032819	TruB_C	231	297
IPR002501	PsdUridine_synth_N	114	230

External Links

No external refs found!

Mp4g12650.1 (CBF5, AtCBF5, NAP57, AtNAP57)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation