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  5. Mp3g17160.1

Mp3g17160.1 (MRL1)


Aliases : MRL1

Description : Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana (sp|q0wlc6|pp349_arath : 552.0)


Gene families : OG0004421 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g17160.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00224p00011500 MRL1,... Pentatricopeptide repeat-containing protein MRL1,... 0.04 OrthoFinder output from all 47 species
AT4G34830 MRL1 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g16036 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03622 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11874 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25377.t1 MRL1, Aspi01Gene25377 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02698 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G061200.1 Ceric.28G061200 rbcL-mRNA stability factor *(MRL1) & original... 0.04 OrthoFinder output from all 47 species
Dac_g12659 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03176 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21513 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10337 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024119001 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.05 OrthoFinder output from all 47 species
Gb_33501 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g10170.1 MRL1, LOC_Os10g10170 Pentatricopeptide repeat-containing protein MRL1,... 0.04 OrthoFinder output from all 47 species
Lfl_g02395 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.07 OrthoFinder output from all 47 species
MA_10429571g0010 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.03 OrthoFinder output from all 47 species
MA_122602g0010 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.02 OrthoFinder output from all 47 species
Nbi_g03133 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08612 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08167 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003951 No alias rbcL-mRNA stability factor *(MRL1) & original... 0.04 OrthoFinder output from all 47 species
Solyc01g111020.3.1 MRL1, Solyc01g111020 Pentatricopeptide repeat-containing protein MRL1,... 0.05 OrthoFinder output from all 47 species
Spa_g01352 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002719_P003 MRL1, Zm00001e002719 Pentatricopeptide repeat-containing protein MRL1,... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 568 727
IPR002885 Pentatricopeptide_repeat 771 818
IPR002885 Pentatricopeptide_repeat 739 769
IPR002885 Pentatricopeptide_repeat 521 553
No external refs found!