Mp2g11550.1

Description : DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana (sp|q84lk0|msh1_arath : 90.9)

Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp2g11550.1
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00265580	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
AMTR_s00018p00168540	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH1, mitochondrial...	0.07	OrthoFinder output from all 47 species
AT1G65070	No alias	DNA mismatch repair protein MutS, type 2	0.04	OrthoFinder output from all 47 species
Ala_g09056	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g04468	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11010	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0068.g036437	No alias	not classified & original description: CDS=249-2714	0.05	OrthoFinder output from all 47 species
Ceric.34G068900.1	Ceric.34G068900	not classified & original description: pacid=50624175...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.149	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dcu_g11218	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07894	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12779	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os04g58410.1	LOC_Os04g58410	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
LOC_Os10g36530.1	LOC_Os10g36530	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
Len_g03377	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g02342	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g26063	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19502	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g59488	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g13786	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16282	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Smo141299	No alias	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Smo421325	No alias	No description available	0.03	OrthoFinder output from all 47 species
Solyc02g078390.3.1	Solyc02g078390	DNA mismatch repair protein MSH1, mitochondrial...	0.02	OrthoFinder output from all 47 species
Zm00001e006512_P001	Zm00001e006512	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Zm00001e012571_P001	Zm00001e012571	DNA mismatch repair protein MSH1, mitochondrial...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005247	voltage-gated chloride channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
MF	GO:0005254	chloride channel activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006821	chloride transport	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015108	chloride transmembrane transporter activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0071586	CAAX-box protein processing	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	512	693

External Links

No external refs found!

Mp2g11550.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation