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  5. Mp1g13850.1

Mp1g13850.1


Description : DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana (sp|q8h1f6|dgp3_arath : 370.0)


Gene families : OG0006215 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g13850.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00070p00106620 evm_27.TU.AmTr_v1... DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G02790 No alias GTP-binding family protein 0.05 OrthoFinder output from all 47 species
Als_g12630 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01311 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53696.t2 Aspi01Gene53696 ribosome bioGenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037847 No alias ribosome biogenesis GTPase *(RgbA) & original... 0.03 OrthoFinder output from all 47 species
Cba_g10973 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G030800.1 Ceric.13G030800 ribosome biogenesis GTPase *(RgbA) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g15823 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24618 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15491 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011078001 No alias DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os05g35540.1 LOC_Os05g35540 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Lfl_g26262 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38635 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c16_16460V3.1 Pp3c16_16460 GTP-binding family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008458 No alias ribosome biogenesis GTPase *(RgbA) & original... 0.06 OrthoFinder output from all 47 species
Sam_g35590 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g084270.3.1 Solyc06g084270 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g06524 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e031798_P004 Zm00001e031798 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 223 284
No external refs found!