- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana (sp|q9ls25|pp420_arath : 370.0)
Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp1g08510.1 | |
| Cluster | HCCA: Cluster_50 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00149p00067730 | evm_27.TU.AmTr_v1... | No description available | 0.03 | OrthoFinder output from all 47 species | |
| AT4G16390 | SVR7 | pentatricopeptide (PPR) repeat-containing protein | 0.13 | OrthoFinder output from all 47 species | |
| AT5G46580 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.14 | OrthoFinder output from all 47 species | |
| Adi_g113698 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g02200 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g01055 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g07346 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0262.g060841 | No alias | not classified & original description: CDS=82-2085 | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.15G014300.1 | Ceric.15G014300 | not classified & original description: pacid=50639905... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g15325 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g14136 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g17091 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g01446 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g16017 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01003493001 | SVR7 | Pentatricopeptide repeat-containing protein At4g16390,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_17291 | SVR7 | Pentatricopeptide repeat-containing protein At4g16390,... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_19282 | No alias | Pentatricopeptide repeat-containing protein At5g46580,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g11670.1 | SVR7, LOC_Os03g11670 | Pentatricopeptide repeat-containing protein ATP4... | 0.03 | OrthoFinder output from all 47 species | |
| MA_283144g0010 | No alias | Pentatricopeptide repeat-containing protein At5g46580,... | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g09352 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g01171 | SVR7 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g12890 | SVR7 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Smo442013 | No alias | Pentatricopeptide repeat-containing protein At5g46580,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc08g077140.1.1 | Solyc08g077140 | Pentatricopeptide repeat-containing protein At5g46580,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc11g012670.1.1 | SVR7, Solyc11g012670 | Pentatricopeptide repeat-containing protein At4g16390,... | 0.15 | OrthoFinder output from all 47 species | |
| Spa_g04939 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e000850_P001 | SVR7, Zm00001e000850 | Pentatricopeptide repeat-containing protein ATP4,... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | HCCA |
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004366 | glycerol-3-phosphate O-acyltransferase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0008374 | O-acyltransferase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016782 | transferase activity, transferring sulphur-containing groups | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035596 | methylthiotransferase activity | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| MF | GO:0050497 | alkylthioltransferase activity | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |