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  5. Zm00001e038788_P002

Zm00001e038788_P002 (Zm00001e038788)


Aliases : Zm00001e038788

Description : serine-tRNA ligase


Gene families : OG0003763 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003763_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038788_P002
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00038540 evm_27.TU.AmTr_v1... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder output from all 47 species
AT5G27470 No alias seryl-tRNA synthetase / serine--tRNA ligase 0.09 OrthoFinder output from all 47 species
Adi_g088525 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Aev_g01092 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010712 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.09 OrthoFinder output from all 47 species
Ceric.02G103200.1 Ceric.02G103200 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.57 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cre03.g189400 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.07 OrthoFinder output from all 47 species
Dcu_g14826 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01000041001 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
LOC_Os01g37837.1 LOC_Os01g37837 serine-tRNA ligase 0.07 OrthoFinder output from all 47 species
LOC_Os03g10190.1 LOC_Os03g10190 serine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Lfl_g06099 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
MA_10433279g0010 No alias Serine--tRNA ligase OS=Helianthus annuus... 0.04 OrthoFinder output from all 47 species
Mp8g15990.1 No alias serine-tRNA ligase 0.1 OrthoFinder output from all 47 species
Nbi_g05312 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Sam_g09340 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Smo99251 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Solyc01g098880.3.1 Solyc01g098880 serine-tRNA ligase 0.14 OrthoFinder output from all 47 species
Spa_g10648 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Tin_g14460 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR015866 Ser-tRNA-synth_1_N 1 114
IPR002314 aa-tRNA-synt_IIb 223 409
No external refs found!