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  5. Zm00001e037912_P001

Zm00001e037912_P001 (MURE, PDE316, ATMURE,...)


Aliases : MURE, PDE316, ATMURE, Zm00001e037912

Description : PAP11/MURE cofactor of plastid-encoded RNA polymerase


Gene families : OG0004194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e037912_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00236210 MURE, PDE316,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 OrthoFinder output from all 47 species
AT1G63680 MURE, PDE316, ATMURE acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases 0.17 OrthoFinder output from all 47 species
Als_g09620 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.04 OrthoFinder output from all 47 species
Aop_g11920 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011499 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.05 OrthoFinder output from all 47 species
Cba_g03909 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.05 OrthoFinder output from all 47 species
Cba_g69159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G004600.1 MURE, PDE316,... cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.12 OrthoFinder output from all 47 species
Cre12.g519900 MURE, PDE316, ATMURE RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Dcu_g13192 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Dde_g05922 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Ehy_g03961 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
GSVIVT01019746001 MURE, PDE316, ATMURE RNA biosynthesis.organelle machineries.RNA polymerase... 0.09 OrthoFinder output from all 47 species
Len_g12297 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.06 OrthoFinder output from all 47 species
Lfl_g03366 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.05 OrthoFinder output from all 47 species
MA_961480g0010 MURE, PDE316, ATMURE PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Mp6g20740.1 MURE, PDE316, ATMURE PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.08 OrthoFinder output from all 47 species
Ore_g33830 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Pir_g16747 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Pir_g64894 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Pp3c24_18820V3.1 MURE, PDE316,... acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases 0.03 OrthoFinder output from all 47 species
Sam_g51453 No alias cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Smo148635 MURE, PDE316, ATMURE RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
Solyc08g081170.4.1 MURE, PDE316,... PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0016874 ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR004101 Mur_ligase_C 565 648
IPR013221 Mur_ligase_cen 337 544
No external refs found!