Zm00001e036721_P002 (GCT, Zm00001e036721)

Aliases : GCT, Zm00001e036721

Description : component MED13 of kinase module of MEDIATOR transcription co-activator complex

Gene families : OG0005581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005581_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e036721_P002
Cluster	HCCA: Cluster_163

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00198p00028070	GCT,...	RNA biosynthesis.RNA polymerase II-dependent...	0.07	OrthoFinder output from all 47 species
AT1G55325	GCT	RNA polymerase II transcription mediators	0.12	OrthoFinder output from all 47 species
Adi_g014199	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Ala_g37172	GCT	component *(MED13) of kinase module of MEDIATOR...	0.08	OrthoFinder output from all 47 species
Als_g01993	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Aob_g28951	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Aop_g09012	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Aspi01Gene47628.t1	GCT, Aspi01Gene47628	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Aspi01Gene47629.t1	GCT, Aspi01Gene47629	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0015.g014125	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Ceric.39G047500.1	GCT, Ceric.39G047500	component *(MED13) of kinase module of MEDIATOR...	0.15	OrthoFinder output from all 47 species
Dcu_g04156	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Ehy_g17091	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
GSVIVT01025465001	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.18	OrthoFinder output from all 47 species
Gb_30550	GCT	component MED13 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
LOC_Os05g37500.1	GCT, LOC_Os05g37500	component MED13 of kinase module of MEDIATOR...	0.11	OrthoFinder output from all 47 species
Len_g28451	GCT	component *(MED13) of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Lfl_g29089	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
MA_10431052g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_577306g0010	GCT	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_84527g0010	GCT	component MED13 of kinase module of MEDIATOR...	0.06	OrthoFinder output from all 47 species
Mp1g01940.1	GCT	component MED13 of kinase module of MEDIATOR...	0.09	OrthoFinder output from all 47 species
Msp_g14816	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Nbi_g38836	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Ore_g36609	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Ppi_g03289	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026430	GCT	component *(MED13) of kinase module of MEDIATOR...	0.08	OrthoFinder output from all 47 species
Smo447924	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.06	OrthoFinder output from all 47 species
Solyc04g039950.4.1	GCT, Solyc04g039950	component MED13 of kinase module of MEDIATOR...	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016592	mediator complex	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009401	Med13_C	1461	1869
IPR021643	Mediator_Med13_N	2	247
IPR041285	MID_MedPIWI	1077	1312

External Links

No external refs found!

Zm00001e036721_P002 (GCT, Zm00001e036721)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation