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  5. Zm00001e027763_P001

Zm00001e027763_P001 (CARB, Zm00001e027763)


Aliases : CARB, Zm00001e027763

Description : large subunit of carbamoyl phosphate synthetase heterodimer. large subunit of carbamoyl phosphate synthetase heterodimer


Gene families : OG0004410 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027763_P001
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00226690 CARB,... Nucleotide metabolism.pyrimidines.ribonucleotide... 0.03 OrthoFinder output from all 47 species
AT1G29900 CARB carbamoyl phosphate synthetase B 0.09 OrthoFinder output from all 47 species
Als_g39625 CARB not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13802 CARB EC_6.3 ligase forming carbon-nitrogen bond & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037310 CARB EC_6.3 ligase forming carbon-nitrogen bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.04G106800.1 CARB, Ceric.04G106800 EC_6.3 ligase forming carbon-nitrogen bond & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.3 CARB Nucleotide metabolism.pyrimidines.ribonucleotide... 0.02 OrthoFinder output from all 47 species
Dcu_g07166 CARB EC_6.3 ligase forming carbon-nitrogen bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01025125001 CARB Nucleotide metabolism.pyrimidines.ribonucleotide... 0.04 OrthoFinder output from all 47 species
MA_10329277g0010 CARB Carbamoyl-phosphate synthase large chain, chloroplastic... 0.03 OrthoFinder output from all 47 species
Nbi_g09294 CARB EC_6.3 ligase forming carbon-nitrogen bond & original... 0.04 OrthoFinder output from all 47 species
Pp3c2_19430V3.1 CARB, Pp3c2_19430 carbamoyl phosphate synthetase B 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011607 MGS-like_dom 1043 1128
IPR005480 CarbamoylP_synth_lsu_oligo 499 618
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 757 961
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 199 406
No external refs found!