Zm00001e025691_P001 (EMB2369, Zm00001e025691)

Aliases : EMB2369, Zm00001e025691

Description : leucine-tRNA ligase

Gene families : OG0005525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005525_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e025691_P001
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00106p00043170	EMB2369,...	Leucine--tRNA ligase, chloroplastic/mitochondrial...	0.03	OrthoFinder output from all 47 species
AMTR_s00106p00046740	EMB2369,...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.1	OrthoFinder output from all 47 species
AT4G04350	EMB2369	tRNA synthetase class I (I, L, M and V) family protein	0.02	OrthoFinder output from all 47 species
Adi_g109524	EMB2369	leucine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11026	EMB2369	leucine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g03591	EMB2369	leucine-tRNA ligase & original description: none	0.09	OrthoFinder output from all 47 species
Aop_g12623	EMB2369	leucine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g13379	EMB2369	leucine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G067300.1	EMB2369, Ceric.03G067300	leucine-tRNA ligase & original description:...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.51	EMB2369	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Cre13.g578451	EMB2369	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.07	OrthoFinder output from all 47 species
Dac_g01026	EMB2369	leucine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g03124	EMB2369	leucine-tRNA ligase & original description: none	0.07	OrthoFinder output from all 47 species
Dde_g07073	EMB2369	leucine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g01662	EMB2369	leucine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01012668001	EMB2369	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.15	OrthoFinder output from all 47 species
Gb_36904	EMB2369	leucine-tRNA ligase	0.12	OrthoFinder output from all 47 species
LOC_Os01g03020.1	EMB2369, LOC_Os01g03020	leucine-tRNA ligase	0.09	OrthoFinder output from all 47 species
Lfl_g03404	EMB2369	leucine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
MA_413765g0010	EMB2369	leucine-tRNA ligase	0.05	OrthoFinder output from all 47 species
MA_509140g0010	EMB2369	Leucine--tRNA ligase, chloroplastic/mitochondrial...	0.02	OrthoFinder output from all 47 species
MA_51707g0010	EMB2369	Leucine--tRNA ligase, chloroplastic/mitochondrial...	0.02	OrthoFinder output from all 47 species
MA_9972763g0010	EMB2369	Leucine--tRNA ligase, chloroplastic/mitochondrial...	0.04	OrthoFinder output from all 47 species
Mp3g22600.1	EMB2369	leucine-tRNA ligase	0.1	OrthoFinder output from all 47 species
Msp_g18916	EMB2369	leucine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g15838	EMB2369	leucine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g15404	EMB2369	leucine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g26221	EMB2369	leucine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16597	No alias	leucine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Solyc02g080990.2.1	EMB2369, Solyc02g080990	leucine-tRNA ligase	0.08	OrthoFinder output from all 47 species
Spa_g15501	EMB2369	leucine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g28130	EMB2369	leucine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0002161	aminoacyl-tRNA editing activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071586	CAAX-box protein processing	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002300	aa-tRNA-synth_Ia	712	742
IPR015413	Methionyl/Leucyl_tRNA_Synth	108	239
IPR025709	Leu_tRNA-synth_edit	288	481
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	798	906

External Links

No external refs found!

Zm00001e025691_P001 (EMB2369, Zm00001e025691)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation