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  5. Zm00001e025470_P001

Zm00001e025470_P001 (PPR596, Zm00001e025470)


Aliases : PPR596, Zm00001e025470

Description : RNA editing factor (POCO)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025470_P001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00019470 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.06 OrthoFinder output from all 47 species
AMTR_s00095p00027730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.07 OrthoFinder output from all 47 species
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.1 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g057168 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07362 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02151 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0032.g024834 No alias RNA editing factor *(POCO) & original description: CDS=106-2040 0.03 OrthoFinder output from all 47 species
Azfi_s0251.g060292 No alias RNA editing factor *(POCO) & original description: CDS=143-2071 0.02 OrthoFinder output from all 47 species
Ceric.17G065300.1 Ceric.17G065300 RNA editing factor *(POCO) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.31G052700.1 Ceric.31G052700 RNA editing factor *(POCO) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g21533 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01745 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08858 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01006654001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 OrthoFinder output from all 47 species
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.07 OrthoFinder output from all 47 species
Gb_03508 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species
Gb_20238 No alias RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os04g25410.1 LOC_Os04g25410 Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
LOC_Os07g12140.1 LOC_Os07g12140 RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
LOC_Os12g07260.1 PPR596, LOC_Os12g07260 RNA editing factor (POCO) 0.09 OrthoFinder output from all 47 species
Len_g25974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10791 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
Ore_g27844 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02315 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Smo406783 PPR596 Pentatricopeptide repeat-containing protein At1g80270,... 0.07 OrthoFinder output from all 47 species
Solyc01g079320.4.1 Solyc01g079320 Pentatricopeptide repeat-containing protein At1g02370,... 0.04 OrthoFinder output from all 47 species
Solyc01g100580.3.1 Solyc01g100580 Pentatricopeptide repeat-containing protein At4g01990,... 0.05 OrthoFinder output from all 47 species
Solyc02g078330.3.1 Solyc02g078330 Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
Solyc06g005140.3.1 Solyc06g005140 Pentatricopeptide repeat-containing protein At4g02820,... 0.07 OrthoFinder output from all 47 species
Solyc07g063220.4.1 Solyc07g063220 Pentatricopeptide repeat-containing protein At4g21705,... 0.02 OrthoFinder output from all 47 species
Solyc11g006380.2.1 Solyc11g006380 Pentatricopeptide repeat-containing protein At1g60770... 0.09 OrthoFinder output from all 47 species
Solyc12g020050.2.1 PPR596, Solyc12g020050 RNA editing factor (POCO) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 257 417
IPR033443 PPR_long 431 561
No external refs found!