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  5. Zm00001e020710_P002

Zm00001e020710_P002 (Zm00001e020710)


Aliases : Zm00001e020710

Description : Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana (sp|q0wvv0|ppr31_arath : 646.0)


Gene families : OG0007769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020710_P002
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00085920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g10910,... 0.09 OrthoFinder output from all 47 species
AT1G10910 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
Aev_g25987 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25084 No alias RNA editing factor *(PDM2) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g24122 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00767 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34425 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G067700.1 Ceric.11G067700 RNA editing factor *(PDM2) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g05612 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01022920001 No alias Pentatricopeptide repeat-containing protein At1g10910,... 0.07 OrthoFinder output from all 47 species
Gb_14466 No alias Pentatricopeptide repeat-containing protein At1g10910,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g37870.4 LOC_Os01g37870 Pentatricopeptide repeat-containing protein At1g10910,... 0.08 OrthoFinder output from all 47 species
Len_g08793 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
MA_316275g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g10433 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08999 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60452 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0141.g022758 No alias RNA editing factor *(PDM2) & original description: CDS=659-2260 0.02 OrthoFinder output from all 47 species
Sam_g19491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g040260.2.1 Solyc11g040260 Pentatricopeptide repeat-containing protein At1g10910,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 321
IPR002885 Pentatricopeptide_repeat 394 442
IPR002885 Pentatricopeptide_repeat 327 371
IPR002885 Pentatricopeptide_repeat 149 196
IPR002885 Pentatricopeptide_repeat 207 267
No external refs found!