Zm00001e019889_P001 (Zm00001e019889)

Aliases : Zm00001e019889

Description : phenylalanine-tRNA ligase

Gene families : OG0004257 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004257_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e019889_P001
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00163p00072710	evm_27.TU.AmTr_v1...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
AT3G58140	No alias	phenylalanyl-tRNA synthetase class IIc family protein	0.03	OrthoFinder output from all 47 species
Aev_g29156	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g10771	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g48930	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g32277	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01694	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene25853.t1	Aspi01Gene25853	organellar phenylalanine-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g03931	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G024500.1	Ceric.07G024500	organellar phenylalanine-tRNA ligase & original...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020930.14	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Cre02.g079600	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.08	OrthoFinder output from all 47 species
Dac_g07152	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g29068	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g50825	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g00588	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02422	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.09	OrthoFinder output from all 47 species
GSVIVT01010923001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	OrthoFinder output from all 47 species
Gb_17164	No alias	phenylalanine-tRNA ligase	0.02	OrthoFinder output from all 47 species
LOC_Os12g34860.1	LOC_Os12g34860	phenylalanine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Len_g02295	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g08346	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.07	OrthoFinder output from all 47 species
Lfl_g08347	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
MA_12107g0010	No alias	phenylalanine-tRNA ligase	0.06	OrthoFinder output from all 47 species
Mp2g23280.1	No alias	phenylalanine-tRNA ligase	0.02	OrthoFinder output from all 47 species
Msp_g01117	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g10100	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g16357	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g44045	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g56886	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g09268	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g02158	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019810	No alias	organellar phenylalanine-tRNA ligase & original...	0.03	OrthoFinder output from all 47 species
Smo165421	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Tin_g01986	No alias	organellar phenylalanine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEA	Interproscan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004325	ferrochelatase activity	IEP	HCCA
MF	GO:0004813	alanine-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002319	Phenylalanyl-tRNA_Synthase	135	344
IPR005121	Fdx_antiC-bd	357	447

External Links

No external refs found!

Zm00001e019889_P001 (Zm00001e019889)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation